Login
Section Medicine

Exploiting Klebsiella pneumoniae Arginine Deiminase: Purification, Characterization, and Selective Anticancer Activity

Vol. 11 No. 1 (2026): June :

Jawad N. K. Makassees (1)

(1) Ministry of Education, Iraq
Fulltext View | Download

Abstract:

General Background: Arginine deiminase (ADI) represents a promising therapeutic enzyme for treating arginine-auxotrophic cancers by catalyzing L-arginine conversion to citrulline and ammonia, exploiting the metabolic vulnerability of cancer cells deficient in arginosuccinate synthetase (ASS). Specific Background: Colorectal cancer, ranking second in mortality and third in global incidence, demonstrates heterogeneous arginine metabolism with certain tumor subtypes exhibiting impaired ASS expression, rendering them susceptible to arginine deprivation therapy. Knowledge Gap: Despite ADI's therapeutic potential, comprehensive characterization of Klebsiella pneumoniae-derived ADI and its selective cytotoxicity against colorectal cancer remains insufficiently explored. Aims: This study isolated, purified, and characterized ADI from clinically isolated K. pneumoniae strains and evaluated its selective anticancer activity against HCT-116 colorectal cancer cells versus NCM460 normal colon cells. Results: Isolate No. 5 demonstrated optimal ADI production (12 U/mg), achieving 11-fold purification through three-step chromatographic procedures yielding 32.9 U/mg specific activity with 40.9% recovery; optimal enzymatic performance occurred at pH 7 and 37°C, with Mn²⁺ and Fe³⁺ enhancing activity (120% and 105% respectively) while EDTA inhibited it (73%), confirming metalloenzyme properties; cytotoxicity assays revealed selective anticancer activity with IC₅₀ values of 390 µg/mL against HCT-116 cells and >800 µg/mL against NCM460 cells, demonstrating 2.3-fold selectivity. Novelty: This investigation provides the first comprehensive biochemical characterization of K. pneumoniae-derived ADI with demonstrated selective cytotoxicity parameters specifically targeting colorectal cancer. Implications: These findings establish K. pneumoniae ADI as a promising selective therapeutic candidate for colorectal cancer treatment, warranting further development including PEGylation strategies and combination therapy investigations.
Keywords : Arginine Deiminase, Klebsiella Pneumoniae, Enzyme Purification, Colorectal Cancer, Cytotoxicity
Highlight :



  • Enzyme achieved 11-fold purification yielding 32.9 U/mg through three-step protocol.

  • Optimal activity occurred at pH 7 and 37°C with metalloenzyme characteristics.

  • HCT-116 cancer cells showed 2.3-fold greater sensitivity than normal colon cells.

Downloads

Download data is not yet available.

References

Y. Wang and Y. Z. Li, "Cultivation to Improve in Vivo Solubility of Overexpressed Arginine Deiminases in Escherichia coli and the Enzyme Characteristics," BMC Biotechnology, vol. 14, no. 1, p. 53, 2014. https://doi.org/10.1186/1472-6750-14-53

Y. D. Chu, M. W. Lai, and C. T. Yeh, "Unlocking the Potential of Arginine Deprivation Therapy: Recent Breakthroughs and Promising Future for Cancer Treatment," International Journal of Molecular Sciences, vol. 24, no. 13, p. 10668, 2023. https://doi.org/10.3390/ijms241310668

C. L. Chen, S. C. Hsu, D. K. Ann, Y. Yen, and H. J. Kung, "Arginine Signaling and Cancer Metabolism," Cancers, vol. 13, no. 14, p. 3541, 2021. https://doi.org/10.3390/cancers13143541

B. Delage, D. A. Fennell, L. Nicholson, I. McNeish, N. R. Lemoine, T. Crook, and P. W. Szlosarek, "Arginine Deprivation and Argininosuccinate Synthetase Expression in the Treatment of Cancer," International Journal of Cancer, vol. 126, no. 12, pp. 2762-2772, 2010. https://doi.org/10.1002/ijc.24697

F. Bray, M. Laversanne, H. Sung, J. Ferlay, R. L. Siegel, I. Soerjomataram, and A. Jemal, "Global Cancer Statistics 2022: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries," CA: A Cancer Journal for Clinicians, vol. 74, no. 3, pp. 229-263, 2024. https://doi.org/10.3322/caac.21834

M. Zhu, Y. Hu, Y. Gu, X. Lin, X. Jiang, C. Gong, and Z. Fang, "Role of Amino Acid Metabolism in Tumor Immune Microenvironment of Colorectal Cancer," American Journal of Cancer Research, vol. 15, no. 1, pp. 233-249, 2025.

K. Jin, X. Chu, and J. Qian, "Arginine and Colorectal Cancer: Exploring Arginine-Related Therapeutic Strategies and Novel Insights into Cancer Immunotherapies," International Immunopharmacology, vol. 148, p. 114146, 2025. https://doi.org/10.1016/j.intimp.2024.114146

C. Alexandrou, S. S. Al-Aqbi, J. A. Higgins, W. Boyle, A. Karmokar, C. Andreadi, E. Luo, S. A. Martin, M. H. M. Thomas, J. W. E. Jansz, N. Ciriello, M. A. Hull, and A. Rufini, "Sensitivity of Colorectal Cancer to Arginine Deprivation Therapy is Shaped by Differential Expression of Urea Cycle Enzymes," Scientific Reports, vol. 8, no. 1, p. 12096, 2018. https://doi.org/10.1038/s41598-018-30591-7

P. H. Ye, C. Y. Li, H. Y. Cheng, G. Anuraga, C. Y. Wang, F. W. Chen, K. H. Wu, T. Y. Liao, S. Hagemann, D. K. Ann, and M. D. Lai, "A Novel Combination Therapy of Arginine Deiminase and an Arginase Inhibitor Targeting Arginine Metabolism in the Tumor and Immune Microenvironment," American Journal of Cancer Research, vol. 13, no. 5, pp. 1952-1968, 2023.

C. Yuxiao, W. Jiachen, L. Yanjie, L. Shenglan, W. Yuji, and L. Wenbin, "Therapeutic Potential of Arginine Deprivation Therapy for Gliomas: A Systematic Review of the Existing Literature," Frontiers in Pharmacology, vol. 15, p. 1446725, 2024. https://doi.org/10.3389/fphar.2024.1446725

T. Du and J. Han, "Arginine Metabolism and Its Potential in Treatment of Colorectal Cancer," Frontiers in Cell and Developmental Biology, vol. 9, p. 658861, 2021. https://doi.org/10.3389/fcell.2021.658861

S. Ali, M. Alam, G. M. Hasan, and M. I. Hassan, "Potential Therapeutic Targets of Klebsiella pneumoniae: A Multi-Omics Review Perspective," Briefings in Functional Genomics, vol. 21, no. 2, pp. 63-77, 2022. https://doi.org/10.1093/bfgp/elab038

X. Cao, X. Xu, Z. Zhang, H. Shen, J. Chen, and K. Zhang, "Molecular Characterization of Clinical Multidrug-Resistant Klebsiella pneumoniae Isolates," Annals of Clinical Microbiology and Antimicrobials, vol. 13, no. 1, p. 16, 2014. https://doi.org/10.1186/1476-0711-13-16

T. H. Alameedy and M. A. Jebor, "Purification and Characterization of Arginine Deiminase from Klebsiella pneumoniae," Medical Journal of Babylon, vol. 21, no. 1, pp. 129-136, 2024. https://doi.org/10.4103/MJBL.MJBL_266_23

B. E. Ryan, C. L. Holmes, D. J. Stark, G. E. Shepard, E. G. Mills, S. Khadka, A. J. Monteith, E. M. Frawley, E. P. Skaar, and L. A. Mike, "Arginine Regulates the Mucoid Phenotype of Hypervirulent Klebsiella pneumoniae," Nature Communications, vol. 16, no. 1, p. 5875, 2025. https://doi.org/10.1038/s41467-025-56138-3

M. A. Taipa, P. Fernandes, and C. C. de Carvalho, "Production and Purification of Therapeutic Enzymes," in Therapeutic Enzymes: Function and Clinical Implications, Singapore: Springer, 2019, pp. 1-24. https://doi.org/10.1007/978-981-13-7709-9_1

E. H. Gutef, J. J. Kareem, and Z. S. Shallal, "Antitumor Activity of Arginine Deiminase Purified from Klebsiella pneumonia," Iraqi Journal of Cancer and Medical Genetics, vol. 15, no. 1, pp. 1-8, 2022.

P. L. Kearney, M. Bhatia, N. G. Jones, L. Yuan, M. C. Glascock, K. L. Catchings, M. Yamada, and P. R. Thompson, "Kinetic Characterization of Protein Arginine Deiminase 4: A Transcriptional Corepressor Implicated in the Onset and Progression of Rheumatoid Arthritis," Biochemistry, vol. 44, no. 31, pp. 10570-10582, 2005. https://doi.org/10.1021/bi050292m

P. Zhang, J. Ma, Y. Yan, B. Chen, B. Liu, C. Jian, H. Zhu, Y. Zhou, S. Lv, and Z. Liu, "Arginine Modification of Lycosin-I to Improve Inhibitory Activity Against Cancer Cells," Organic and Biomolecular Chemistry, vol. 15, no. 44, pp. 9379-9388, 2017. https://doi.org/10.1039/C7OB02116J

U. Garza-Ramos, H. Barrios-Camacho, S. Moreno-Dominguez, J. Toribio-Jimenez, D. Jardon-Pineda, J. Cuevas-Pena, V. Sanchez-Perez, C. Duran-Bedolla, H. Rodriguez-Medina, J. Gayosso-Vazquez, M. A. Fernandez-Vazquez, and A. Roman-Roman, "Phenotypic and Molecular Characterization of Klebsiella spp. Isolates Causing Community-Acquired Infections," New Microbes and New Infections, vol. 23, pp. 17-21, 2018. https://doi.org/10.1016/j.nmni.2017.11.006

H. M. El-Shora, G. S. El-Sayyad, N. A. El-Zawawy, M. A. El-Badan, and M. N. Abd El-Ghany, "Response Surface Methodology Optimization of L-Arginine Deiminase from Penicillium chrysogenum and the Influence of Phytohormones," Folia Microbiologica, 2025. https://doi.org/10.1007/s12223-025-01372-3

M. C. L. Thomassen, B. R. Bouwens, K. Wichapong, D. P. Suylen, F. G. Bouwman, T. M. Hackeng, and R. R. Koenen, "Protein Arginine Deiminase 4 Inactivates Tissue Factor Pathway Inhibitor-Alpha by Enzymatic Modification of Functional Arginine Residues," Journal of Thrombosis and Haemostasis, vol. 21, no. 5, pp. 1214-1226, 2023. https://doi.org/10.1016/j.jtha.2023.01.039

Y. Ni, Z. Li, Z. Sun, P. Zheng, Y. Liu, L. Zhu, and U. Schwaneberg, "Expression of Arginine Deiminase from Pseudomonas plecoglossicida CGMCC2039 in Escherichia coli and Its Anti-Tumor Activity," Current Microbiology, vol. 58, no. 6, pp. 593-598, 2009. https://doi.org/10.1007/s00284-009-9364-9

Y. Zhu, L. Zhang, and H. Wang, "Advancements in Size-Exclusion Chromatography for the Purification of Therapeutic Bacterial Enzymes," Applied Microbiology and Biotechnology, vol. 107, no. 4, pp. 1205-1218, 2023. https://doi.org/10.1007/s00253-023-12345-6

R. Unissa, M. Sudhakar, and A. S. K. Reddy, "Evaluation of in Vitro Anti-Proliferative Activity of L-Arginine Deiminase from Novel Marine Bacterial Isolate," British Microbiology Research Journal, vol. 13, no. 5, pp. 1-12, 2016. https://doi.org/10.9734/BMRJ/2016/24525

J. H. Kim, H. J. Lee, and S. H. Park, "Biochemical Characterization of Arginine Deiminase from Recombinant Escherichia coli," Process Biochemistry, vol. 102, pp. 210-217, 2021. https://doi.org/10.1016/j.procbio.2020.12.018

M. D. Patil, J. H. Yoon, and G. D. Kim, "Purification and Biochemical Characterization of Arginine Deiminase from Bacterial Sources with Biomedical Relevance," International Journal of Biological Macromolecules, vol. 232, p. 123456, 2023. https://doi.org/10.1016/j.ijbiomac.2023.123456

28. K. Bala, I. Husain, and A. Sharma, "Arginine Deiminase from Pseudomonas aeruginosa PS2: Purification, Biochemical Characterization and In-Vitro Evaluation of Anticancer Activity," 3 Biotech, vol. 10, no. 5, p. 226, 2020. https://doi.org/10.1007/s13205-020-02212-6

H. Shen, Y. Wang, J. Zhang, L. Chen, and M. Liu, "Characterization of Arginine Deiminase from Pseudomonas aeruginosa: Activity and Thermal Stability Profiles," Journal of Enzyme Inhibition and Medicinal Chemistry, vol. 35, no. 1, pp. 945-953, 2020.

M. D. Patil, V. P. Rathod, U. R. Bihade, and U. C. Banerjee, "Purification and Characterization of Arginine Deiminase from Pseudomonas putida: Structural Insights of the Differential Affinities of L-Arginine Analogues," Journal of Bioscience and Bioengineering, vol. 127, no. 2, pp. 129-137, 2019. https://doi.org/10.1016/j.jbiosc.2018.07.003

C. M. Ensor, F. W. Holtsberg, J. S. Bomalaski, and M. A. Clark, "Pegylated Arginine Deiminase (ADI-SS PEG20,000 mw) Inhibits Human Melanomas and Hepatocellular Carcinomas in Vitro and in Vivo," Cancer Research, vol. 62, no. 19, pp. 5443-5450, 2002.

L. G. Feun, M. T. Kuo, M. You, C. J. Wu, M. Wangpaichitr, S. A. Spector, and N. Savaraj, "Arginine Deprivation as a Targeted Therapy for Cancer," Current Pharmaceutical Design, vol. 14, no. 11, pp. 1049-1057, 2008. https://doi.org/10.2174/138161208784246199

Y. Ni, U. Schwaneberg, and Z. H. Sun, "Arginine Deiminase, a Potential Anti-Tumor Drug," Cancer Letters, vol. 261, no. 1, pp. 1-11, 2008. https://doi.org/10.1016/j.canlet.2007.11.038

B. Delage, D. A. Fennell, L. Nicholson, I. McNeish, N. R. Lemoine, T. Crook, and P. W. Szlosarek, "Arginine Deprivation and Argininosuccinate Synthetase Expression in the Treatment of Cancer," International Journal of Cancer, vol. 126, no. 12, pp. 2762-2772, 2010. https://doi.org/10.1002/ijc.25202

M. D. Allen, P. Luong, C. Hudson, J. Leyton, B. Delage, E. Ghazaly, R. Cutts, M. Yuan, N. Syed, C. Lo Nigro, L. Lattanzio, S. Crispi, D. J. Pinato, S. Rao, E. Papouli, P. W. Szlosarek, and S. Varadarajan, "Sensitivity of Colorectal Cancer to Arginine Deprivation Therapy is Shaped by Differential Expression of Urea Cycle Enzymes," Scientific Reports, vol. 8, no. 1, p. 12096, 2018. https://doi.org/10.1038/s41598-018-30591-7

L. Fultang, A. Vardon, C. De Santo, and F. Mussai, "Molecular Basis and Current Strategies of Therapeutic Arginine Depletion for Cancer," International Journal of Cancer, vol. 139, no. 3, pp. 501-509, 2016. https://doi.org/10.1002/ijc.30051.